1058 lines
41 KiB
PHP
1058 lines
41 KiB
PHP
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<?php
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/*
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* To change this license header, choose License Headers in Project Properties.
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* To change this template file, choose Tools | Templates
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* and open the template in the editor.
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*/
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class _import {
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protected $pubTypes = array();
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protected $items = array();
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protected $PDO;
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protected $current_record = array(
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'id_manual' => '',
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'year' => '',
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'cited_vars' => array (),
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'type' => '',
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'year_pub' => '',
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'language' => '2',
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'citation' => '',
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'citation_data' => '',
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'author_data' => '',
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'book_author_data' => ''
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);
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public static $brina_fields = array (
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'Affil_1', 'Affil_2', 'Affil_3', 'Affil_4', 'Affil_5', // countries of first five authors
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'JField', // journal scientific field
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'R1_2002','R2_2004','R3_2006','R4_2008','R5_2010','R6_2012','R7_2014',
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'R8_2016','R9_2018', // rounds of data article is refferring to
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'ABCF_CoreYn','R1_R7_ImmigrYn','R1_CitizYn','R2_R5_W_FamiYn','R2_HealthYn',
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'R2_EconMYn','R3_R6_Pwell_bYn','R3_TimingYn','R4_AgeismYn','R4_WelfareYn',
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'R5_CrimiYn','R6_DemocrYn','R7_HealthYn','R8_ClimateYn','R9_JusticeYn', // modules publication is refferring to
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'TOPIC11','TOPIC22', // main two topics (dict_pub_topic weight 1 and 1)
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'T_Politics','T_Citizen','T_Welfare','T_Transition','T_Inequality',
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'T_Immigration','T_Nation','T_Crime','T_Economy','T_SWB','T_Health',
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'T_Culture','T_SCapital','T_Family','T_Work','T_Media','T_Religion',
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'T_Educ','T_Age','T_Gender','T_Environ','T_Europe','T_Methods'); // all topic article is refferring to
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public static $round_ids = array();
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public static $round_fields = array('R1_2002','R2_2004','R3_2006','R4_2008','R5_2010','R6_2012','R7_2014',
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'R8_2016','R9_2018','R10_2020');
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// those are module names as written in TXT import.
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// IDs are from DATABASE!!! PLEASE ADD THEM MANUALLY IF NEEDED AND UPDATE THIS
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public static $ess_modules = array (
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1=>'ABCF_CoreYn',
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2=> 'R1_R7_ImmigrYn',
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3=> 'R1_CitizYn',
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4=> 'R2_R5_W_FamiYn',
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5=> 'R2_HealthYn',
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6=> 'R2_EconMYn',
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7=> 'R3_R6_Pwell_bYn',
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8=> 'R3_TimingYn',
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9=> 'R4_AgeismYn',
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10=> 'R4_WelfareYn',
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11=> 'R5_CrimiYn',
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12=> 'R6_DemocrYn',
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13=> 'R7_HealthYn',
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14=> 'R8_ClimateYn',
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15=> 'R9_JusticeYn'
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);
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// this array stores name of field (that we use) and its offset
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// e.g. "T_Immigration = 7 means that input file stores t_immigration at offset 7
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// we get this with _isolateBrinaColumns
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public static $brina_offsets = array();
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// fetch from database: item[name] = id
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protected $ess_items = array();
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// number of success and failed imports PER TYPE of citation
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private $success = array (1=>0,2=>0,3=>0,4=>0,5=>0,6=>0,7=>0,8=>0,9=>0);
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private $fail = array (1=>0,2=>0,3=>0,4=>0,5=>0,6=>0,7=>0,8=>0,9=>0);
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private $already_in = 0;
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// how many did we pass because we don't know the type
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private $unknown_type = 0;
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// failed to import, you can export/print it should you want to improve.
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private $failed_citations = array();
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// this is array of ALL OK citations
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private $parsed_citations = array();
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private $pub_id = -1;
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public function __construct() {
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global $PDO;
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$this->PDO = $PDO;
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// prep ESS item list
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$this->_prep_ess_items();
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}
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protected function _prep_ess_items() {
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try {
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$stmt = $this->PDO->prepare("SELECT id, name FROM l_ess_item");
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$stmt->execute();
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while ($r = $stmt->fetch(PDO::FETCH_ASSOC)) {
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$this->ess_items[$r['name']] = $r['id'];
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}
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}
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catch (exception $ex) {
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common::except ('Err: ' .$ex .' in ' .__DIR__ .'/' .__FILE__ .':' .__LINE__);
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}
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return;
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}
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// please note TXT must be pipe (|) separated file.
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// reads TXT, year, manual id, item fields and -most important- the citation
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// then, adds publication (and everything related to it - journal, authors)
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// after the thing is added, it links items, topics,...
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public function readTXT ($filename, $block) {
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$line = 0;
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if ($file = fopen($filename, "r")) {
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while(!feof($file) && $line < FILE_LINES_LIMIT) {
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$record = explode ("|", fgets($file));
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// first line contains field names. get vars
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if ($line == 0) {
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$this->items = _import::_isolateItemColumns($record);
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}
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else if ($line > FILE_LINES_SKIP) {
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$this->cleanRecord();
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$this->parseRecord($record);
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$this->current_record['citation_data'] = citation::parse($this->current_record['citation'], $this->current_record['type']);
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$this->counters();
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// DOI already in the DB
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// check citation.php
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if (!is_array ($this->current_record['citation_data']) &&
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$this->current_record['citation_data'] > 0) {
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$this->pub_id = $this->current_record['citation_data'];
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}
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// missing citation data
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else if (!is_array ($this->current_record['citation_data']) &&
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$this->current_record['citation_data'] == '-1') {
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$this->_MissingCitationData();
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}
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// it's new.
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else {
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$this->saveRecord();
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}
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// now, if we have the record...
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if ($this->pub_id > 0) {
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$this->linkItemsBrina();
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}
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}
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$line++;
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}
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fclose($file);
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}
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echo "<br>Finished parsing TXT.<br>"
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."Successfully parsed: " .array_sum($this->success) ."<br>"
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." " .$this->already_in . " of whom are already in the database <br>"
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."Couldn't parse: " .array_sum($this->fail) ."<br>"
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."Unknown type: " .$this->unknown_type;
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echo "\nFail stats: ";
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print_r ($this->fail);
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// echo "\r\n<br>OK good:";
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// print_r ($this->parsed_citations);
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return;
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}
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// same as _readTXT, but WITHOUT inserting the publication & base data (authors, publications,...)
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// this is because metadata (items, topics,...) are split into more files in old scholar excels.
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public function linkTXT ($filename, $block) {
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$line = 0;
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if ($file = fopen($filename, "r")) {
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while(!feof($file) && $line < FILE_LINES_LIMIT) {
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$record = explode ("|", fgets($file));
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// first line contains field names. get vars
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if ($line == 0) {
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$this->items = _import::_isolateItemColumns($record);
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}
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else {
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$this->cleanRecord();
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$this->parseRecord($record);
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// now, if we have the record...
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if ($this->current_record['id_manual'] != '') {
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print_r ($this->current_record);
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$this->linkItemsBrina();
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}
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}
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$line++;
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}
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fclose($file);
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}
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echo "\nFinished parsing TXT. Success: " .array_sum($this->success) ."; fail: " .array_sum($this->fail) ."; unknown type: " .$this->unknown_type;
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echo "\nFail stats: ";
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print_r ($this->fail);
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// echo "\r\n<br>OK good:";
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// print_r ($this->parsed_citations);
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return;
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}
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// this links Brina's google scholar data
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public function linkScholar ($filename) {
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echo "Parsing Scholar metadata...\n";
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$line = 0;
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if ($file = fopen($filename, "r")) {
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while(!feof($file) && $line < FILE_LINES_LIMIT) {
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$record = explode ("|", fgets($file));
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// first line contains field names. get vars
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if ($line == 0) {
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$this->items = _import::_isolateBrinaColumns($record);
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}
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else if ($line > FILE_LINES_SKIP) {
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// $this->_parse_B_Affiliations($record);
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$this->_parse_B_Topics($record);
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// $this->_top_B_topics($record);
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// $this->_round_fields2ids();
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// $this->_parse_B_Rounds($record);
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// $this->_parse_B_Modules($record);
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// $this->_parse_B_jFields($record);
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// $this->_parse_special_topics($record);
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}
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$line++;
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}
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fclose($file);
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}
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else {
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die ('E: Cannot open file');
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}
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echo "Done linking. last.";
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return;
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}
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private function _MissingCitationData() {
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echo "\n**ERR: Couldn't parse citation for this: \n";
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print_r ($this->current_record);
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return;
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}
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//
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// Saves current record to the database
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// if the record is already there, update citations if needed.
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protected function saveRecord () {
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unset ($authors_ids);
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$authors_ids = array();
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// first check if it's already in (based on the manual id!)
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if (!$this->_isRecord()) {
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// explode authors and check if we already have them in the system.
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$this->prep_authors();
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//book chapter needs another layer (editors)
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if ($this->current_record['type']=='8') {
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$this->prep_authors(1);
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}
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// add publication (check for it)
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if (!$this->pub_id = $this->add_publication()) {
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common::except ('Error getting publication ID: ' .$ex .' in ' .__DIR__ .'/' .__FILE__ .':' .__LINE__);
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return;
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}
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}
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// record is in the DB, let's check if it needs to be updated
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else {
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//! TODO, currently it leaves them.
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echo "It is already in the DB?\n";
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}
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}
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protected function linkTopics() {
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if (intval($this->publication_id)==0) {
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return;
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}
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foreach ($this->current_record['topic'] as $topic) {
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try {
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$stmt = $this->PDO->prepare("REPLACE INTO dict_pub_topic (id_publication, id_topic) VALUES (:id_publication, :id_topic)");
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$stmt->execute(array(
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'id_publication' => $this->publication_id,
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'id_topic' => $topic));
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}
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catch (exception $ex) {
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common::except ('Err: ' .$ex .' in ' .__DIR__ .'/' .__FILE__ .':' .__LINE__);
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return false;
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}
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}
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}
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protected function linkItems() {
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if (intval($this->publication_id)==0) {
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return;
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}
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foreach ($this->current_record['topic'] as $item) {
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try {
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$stmt = $this->PDO->prepare("REPLACE INTO dict_pub_item (id_publication, id_item) VALUES (:id_publication, :id_item)");
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$stmt->execute(array(
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'id_publication' => $this->publication_id,
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'id_item' => $item));
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}
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catch (exception $ex) {
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common::except ('Err: ' .$ex .' in ' .__DIR__ .'/' .__FILE__ .':' .__LINE__);
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return false;
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}
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}
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}
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protected function linkModules() {
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if (intval($this->publication_id)==0) {
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return;
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}
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foreach ($this->current_record['module'] as $module) {
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try {
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$stmt = $this->PDO->prepare("REPLACE INTO dict_pub_module (id_publication, id_module) VALUES (:id_publication, :id_module)");
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$stmt->execute(array(
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'id_publication' => $this->publication_id,
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'id_module' => $module));
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}
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catch (exception $ex) {
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common::except ('Err: ' .$ex .' in ' .__DIR__ .'/' .__FILE__ .':' .__LINE__);
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return false;
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||
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}
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||
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}
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}
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protected function linkRounds() {
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||
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if (intval($this->publication_id)==0) {
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return;
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||
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}
|
||
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||
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foreach ($this->current_record['round'] as $round) {
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try {
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$stmt = $this->PDO->prepare("REPLACE INTO dict_pub_round (id_publication, id_round) VALUES (:id_publication, :id_round)");
|
||
|
|
$stmt->execute(array(
|
||
|
|
'id_publication' => $this->publication_id,
|
||
|
|
'id_round' => $round));
|
||
|
|
|
||
|
|
}
|
||
|
|
catch (exception $ex) {
|
||
|
|
common::except ('Err: ' .$ex .' in ' .__DIR__ .'/' .__FILE__ .':' .__LINE__);
|
||
|
|
return false;
|
||
|
|
}
|
||
|
|
}
|
||
|
|
}
|
||
|
|
|
||
|
|
|
||
|
|
protected function linkItemsBrina() {
|
||
|
|
|
||
|
|
foreach($this->current_record['cited_var'] as $name=>$cited) {
|
||
|
|
if ($cited == 1) {
|
||
|
|
// B and C blocks are refferred to as "B itemname" or "B itemname"
|
||
|
|
// a) merge spaces
|
||
|
|
// remove everything up to space
|
||
|
|
|
||
|
|
if (strpos($name, " ")!== false) {
|
||
|
|
$name = str_replace (" ", " ", str_replace (" ", " ", $name));
|
||
|
|
$n = explode (" ", $name);
|
||
|
|
$name = $n[1];
|
||
|
|
}
|
||
|
|
|
||
|
|
try {
|
||
|
|
$stmt = $this->PDO->prepare("REPLACE INTO dict_pub_item (id_item, id_publication) (SELECT :item, id FROM publication WHERE id_manual=:id_manual)");
|
||
|
|
$stmt->execute(array(
|
||
|
|
'item' => $this->ess_items[$name],
|
||
|
|
'id_manual' => $this->current_record['year'] .$this->current_record['id_manual']));
|
||
|
|
|
||
|
|
}
|
||
|
|
catch (exception $ex) {
|
||
|
|
common::except ('Err: ' .$ex .' in ' .__DIR__ .'/' .__FILE__ .':' .__LINE__);
|
||
|
|
return false;
|
||
|
|
}
|
||
|
|
}
|
||
|
|
}
|
||
|
|
}
|
||
|
|
|
||
|
|
// go through publication data and add it
|
||
|
|
protected function add_publication ($for_consideration = false) {
|
||
|
|
$pub_id = false;
|
||
|
|
$already_in = false;
|
||
|
|
|
||
|
|
$is_doi = false;
|
||
|
|
|
||
|
|
if (isset ($this->current_record['citation_data']['doi']) &&
|
||
|
|
$this->current_record['citation_data']['doi']!='') {
|
||
|
|
$is_doi = true;
|
||
|
|
|
||
|
|
if (!$for_consideration) {
|
||
|
|
echo "\n***DOI INFO ***\nReceived:\n";
|
||
|
|
print_r ($this->current_record);
|
||
|
|
}
|
||
|
|
|
||
|
|
}
|
||
|
|
|
||
|
|
switch ($this->current_record['type']) {
|
||
|
|
case 1: // journal article
|
||
|
|
|
||
|
|
$pub = new journalArticle();
|
||
|
|
$pub->setName($this->current_record['citation_data']['title']);
|
||
|
|
$pub->setLanguage($this->current_record['language']??2);
|
||
|
|
$pub->setJournal($this->current_record['citation_data']['journal']);
|
||
|
|
$pub->setAuthors($this->current_record['author_data']);
|
||
|
|
$pub->setAuthorscountries($this->current_record['author_countries']);
|
||
|
|
|
||
|
|
if ($is_doi == true) {
|
||
|
|
$pub->setVolume($this->current_record['citation_data']['volume']);
|
||
|
|
$pub->setIssue($this->current_record['citation_data']['number']);
|
||
|
|
$pub->setDOI($this->current_record['citation_data']['doi']);
|
||
|
|
|
||
|
|
}
|
||
|
|
else {
|
||
|
|
$pub->setVolumeIssue($this->current_record['citation_data']['issue']);
|
||
|
|
}
|
||
|
|
|
||
|
|
|
||
|
|
$pub->setPages($this->current_record['citation_data']['pages']);
|
||
|
|
$pub->setCitation($this->current_record['citation']);
|
||
|
|
$pub->setYear($this->current_record['year_pub']);
|
||
|
|
$pub->setId_manual($this->current_record['year'] .$this->current_record['id_manual']);
|
||
|
|
$pub->setAbstractEng($this->current_record['citation_data']['abstract_eng']);
|
||
|
|
$pub->setAbstractOrig($this->current_record['citation_data']['abstract_orig']);
|
||
|
|
|
||
|
|
$pub_id = $pub->add($for_consideration, $already_in);
|
||
|
|
error_log ($pub_id);
|
||
|
|
|
||
|
|
break;
|
||
|
|
|
||
|
|
case 2: // book
|
||
|
|
$pub = new book();
|
||
|
|
$pub->setName($this->current_record['citation_data']['title']);
|
||
|
|
$pub->setLanguage($this->current_record['language']??2);
|
||
|
|
$pub->setCity($this->current_record['citation_data']['city']);
|
||
|
|
$pub->setPublisher($this->current_record['citation_data']['publisher']);
|
||
|
|
$pub->setYear($this->current_record['year']);
|
||
|
|
$pub->setAuthors($this->current_record['author_data']);
|
||
|
|
|
||
|
|
if ($is_doi == true) {
|
||
|
|
$pub->setDOI($this->current_record['citation_data']['doi']);
|
||
|
|
}
|
||
|
|
$pub->setCitation($this->current_record['citation']);
|
||
|
|
$pub->setId_manual($this->current_record['year'] .$this->current_record['id_manual']);
|
||
|
|
$pub_id = $pub->add($for_consideration, $already_in);
|
||
|
|
// in case of DOI, ADD EXTRA FIELDS!!!!
|
||
|
|
break;
|
||
|
|
|
||
|
|
case 3:
|
||
|
|
$pub = new workpaper();
|
||
|
|
$pub->setName($this->current_record['citation_data']['title']);
|
||
|
|
$pub->setLanguage($this->current_record['language']??2);
|
||
|
|
$pub->setYear($this->current_record['year']);
|
||
|
|
$pub->setAuthors($this->current_record['author_data']);
|
||
|
|
|
||
|
|
if ($is_doi == true) {
|
||
|
|
$pub->setPublisher($this->current_record['citation_data']['publisher']);
|
||
|
|
$pub->setDOI($this->current_record['citation_data']['doi']);
|
||
|
|
}
|
||
|
|
$pub->setCitation($this->current_record['citation']);
|
||
|
|
$pub->setId_manual($this->current_record['year'] .$this->current_record['id_manual']);
|
||
|
|
|
||
|
|
$pub_id = $pub->add($for_consideration, $already_in);
|
||
|
|
break;
|
||
|
|
|
||
|
|
case 4:
|
||
|
|
$pub = new conferencePP();
|
||
|
|
$pub->setName($this->current_record['citation_data']['title']);
|
||
|
|
$pub->setLanguage($this->current_record['language']??2);
|
||
|
|
$pub->setYear($this->current_record['year']);
|
||
|
|
$pub->setAuthors($this->current_record['author_data']);
|
||
|
|
|
||
|
|
if ($is_doi == true) {
|
||
|
|
$pub->setDOI($this->current_record['citation_data']['doi']);
|
||
|
|
}
|
||
|
|
|
||
|
|
$pub->setConferenceName($this->current_record['citation_data']['conference']);
|
||
|
|
$pub->setConferenceCity($this->current_record['citation_data']['city']);
|
||
|
|
|
||
|
|
$pub->setCitation($this->current_record['citation']);
|
||
|
|
$pub->setId_manual($this->current_record['year'] .$this->current_record['id_manual']);
|
||
|
|
|
||
|
|
|
||
|
|
$pub_id = $pub->add($for_consideration, $already_in);
|
||
|
|
break;
|
||
|
|
|
||
|
|
case 5: // report
|
||
|
|
$pub = new report();
|
||
|
|
$pub->setName($this->current_record['citation_data']['title']);
|
||
|
|
$pub->setLanguage($this->current_record['language']??2);
|
||
|
|
$pub->setPublisher($this->current_record['citation_data']['publisher']);
|
||
|
|
$pub->setYear($this->current_record['year']);
|
||
|
|
$pub->setAuthors($this->current_record['author_data']);
|
||
|
|
|
||
|
|
if ($is_doi == true) {
|
||
|
|
$pub->setDOI($this->current_record['citation_data']['doi']);
|
||
|
|
}
|
||
|
|
|
||
|
|
$pub->setCitation($this->current_record['citation']);
|
||
|
|
$pub->setId_manual($this->current_record['year'] .$this->current_record['id_manual']);
|
||
|
|
$pub_id = $pub->add($for_consideration, $already_in);
|
||
|
|
// in case of DOI, ADD EXTRA FIELDS!!!!
|
||
|
|
break;
|
||
|
|
|
||
|
|
case 6:
|
||
|
|
$pub = new thesis();
|
||
|
|
$pub->setName($this->current_record['citation_data']['title']);
|
||
|
|
$pub->setLanguage($this->current_record['language']??2);
|
||
|
|
$pub->setPublisher($this->current_record['citation_data']['publisher']);
|
||
|
|
$pub->setYear($this->current_record['year']);
|
||
|
|
$pub->setAuthors($this->current_record['author_data']);
|
||
|
|
|
||
|
|
if ($is_doi == true) {
|
||
|
|
$pub->setDOI($this->current_record['citation_data']['doi']);
|
||
|
|
}
|
||
|
|
|
||
|
|
$pub->setThesisType($this->current_record['thesis_type']);
|
||
|
|
$pub->setCitation($this->current_record['citation']);
|
||
|
|
$pub->setId_manual($this->current_record['year'] .$this->current_record['id_manual']);
|
||
|
|
$pub_id = $pub->add($for_consideration, $already_in);
|
||
|
|
break;
|
||
|
|
|
||
|
|
|
||
|
|
case 8: // book chapter
|
||
|
|
$pub = new chapter();
|
||
|
|
$pub->setName($this->current_record['citation_data']['title']);
|
||
|
|
$pub->setLanguage($this->current_record['language']??2);
|
||
|
|
$pub->setCity($this->current_record['citation_data']['location']);
|
||
|
|
$pub->setAuthors($this->current_record['author_data']);
|
||
|
|
|
||
|
|
$pub->setPublisher($this->current_record['citation_data']['publisher']);
|
||
|
|
$pub->setYear($this->current_record['year']);
|
||
|
|
|
||
|
|
if ($is_doi == true) {
|
||
|
|
$pub->setDOI($this->current_record['citation_data']['doi']);
|
||
|
|
}
|
||
|
|
|
||
|
|
if (isset ($this->current_record['citation_data']['pages'])) {
|
||
|
|
$pub->setPages($this->current_record['citation_data']['pages']);
|
||
|
|
}
|
||
|
|
|
||
|
|
$pub->setBookTitle($this->current_record['citation_data']['booktitle']);
|
||
|
|
$pub->setBookAuthors($this->current_record['book_author_data']);
|
||
|
|
|
||
|
|
$pub->setCitation($this->current_record['citation']);
|
||
|
|
$pub->setId_manual($this->current_record['year'] .$this->current_record['id_manual']);
|
||
|
|
$pub_id = $pub->add($for_consideration, $already_in);
|
||
|
|
break;
|
||
|
|
|
||
|
|
|
||
|
|
default:
|
||
|
|
echo "PUB TYPE: " .$this->current_record['type'] ."\n";
|
||
|
|
break;
|
||
|
|
}
|
||
|
|
|
||
|
|
|
||
|
|
if (is_object($pub)) {
|
||
|
|
unset ($pub);
|
||
|
|
}
|
||
|
|
|
||
|
|
if ($already_in == true) {
|
||
|
|
$this->already_in++;
|
||
|
|
}
|
||
|
|
return $pub_id;
|
||
|
|
}
|
||
|
|
|
||
|
|
|
||
|
|
// parse through all cites authors and check if they're in the db.
|
||
|
|
// for absent, add them.
|
||
|
|
// return array with IDs.
|
||
|
|
protected function prep_authors($parent=0) {
|
||
|
|
|
||
|
|
|
||
|
|
// do we have &?
|
||
|
|
if ($parent == 0) {
|
||
|
|
$last = explode ("&", $this->current_record['citation_data']['author']);
|
||
|
|
}
|
||
|
|
else {
|
||
|
|
$last = explode ("&", $this->current_record['citation_data']['book_author']);
|
||
|
|
}
|
||
|
|
|
||
|
|
// we explode on every second comma (Lynn, P., Martin, P. & Fidzgerald, R.)
|
||
|
|
$authors = array_filter (array_map(function($value) {
|
||
|
|
return trim(implode(',', $value));
|
||
|
|
},
|
||
|
|
array_chunk(explode(',', $last[0]), 2)));
|
||
|
|
|
||
|
|
|
||
|
|
// add last author
|
||
|
|
if (count ($last) > 1) {
|
||
|
|
array_push ($authors, trim(array_pop($last)));
|
||
|
|
}
|
||
|
|
// array_filter is needed to remove last empty element in case there is trailing comma (before &).
|
||
|
|
array_filter ($authors, function ($value) {return trim($value)!=="";});
|
||
|
|
|
||
|
|
// avoid looping this
|
||
|
|
$num = count ($authors);
|
||
|
|
|
||
|
|
foreach ($authors as $offset => $author) {
|
||
|
|
$first = false;
|
||
|
|
$last = false;
|
||
|
|
|
||
|
|
if ($offset == 0) {
|
||
|
|
$first = true;
|
||
|
|
}
|
||
|
|
elseif ($offset + 1 == $num) {
|
||
|
|
$last = true;
|
||
|
|
}
|
||
|
|
|
||
|
|
if (!author::isAuthor($author)) {
|
||
|
|
$author_id = author::insertAuthor($author);
|
||
|
|
}
|
||
|
|
}
|
||
|
|
|
||
|
|
if ($parent == 1) {
|
||
|
|
$this->current_record['book_author_data'] = $authors;
|
||
|
|
}
|
||
|
|
else {
|
||
|
|
$this->current_record['author_data'] = $authors;
|
||
|
|
}
|
||
|
|
return;
|
||
|
|
}
|
||
|
|
|
||
|
|
|
||
|
|
protected function _isRecord() {
|
||
|
|
try {
|
||
|
|
$stmt = $this->PDO->prepare("SELECT id FROM publication where id_manual=:id_manual");
|
||
|
|
$stmt->execute(array(
|
||
|
|
$this->current_record['year'] .$this->current_record['id_manual']) // id_manual is always YYYYxx (2008xx)
|
||
|
|
);
|
||
|
|
|
||
|
|
// this instead of rowCount to make in compatible with non-mysql DB
|
||
|
|
if ($r = $stmt->fetch(PDO::FETCH_NUM)) {
|
||
|
|
if ($r[0] == 1) {
|
||
|
|
return true;
|
||
|
|
}
|
||
|
|
}
|
||
|
|
return false;
|
||
|
|
|
||
|
|
}
|
||
|
|
catch (exception $ex) {
|
||
|
|
common::except ('Err: ' .$ex .' in ' .__DIR__ .'/' .__FILE__ .':' .__LINE__);
|
||
|
|
}
|
||
|
|
|
||
|
|
return false;
|
||
|
|
|
||
|
|
}
|
||
|
|
|
||
|
|
|
||
|
|
protected function newLanguage($language) {
|
||
|
|
try {
|
||
|
|
$stmt = $this->PDO->prepare("INSERT INTO l_language (name) VALUES (:language)");
|
||
|
|
$stmt->execute(array(
|
||
|
|
'language' => $language));
|
||
|
|
|
||
|
|
return $this->PDO->lastInsertId();
|
||
|
|
}
|
||
|
|
catch (exception $ex) {
|
||
|
|
common::except ('Err: ' .$ex .' in ' .__DIR__ .'/' .__FILE__ .':' .__LINE__);
|
||
|
|
}
|
||
|
|
}
|
||
|
|
|
||
|
|
// counts which records are good and which are not
|
||
|
|
private function counters () {
|
||
|
|
|
||
|
|
if (!is_array ($this->current_record['citation_data']) && $this->current_record['citation_data'] == -2) {
|
||
|
|
$this->unknown_type++;
|
||
|
|
}
|
||
|
|
|
||
|
|
else if (!is_array ($this->current_record['citation_data']) &&
|
||
|
|
$this->current_record['citation_data'] > 0) {
|
||
|
|
$this->success[$this->current_record['type']]++;
|
||
|
|
}
|
||
|
|
else if (!is_array ($this->current_record['citation_data']) &&
|
||
|
|
$this->current_record['citation_data'] == '-1') {
|
||
|
|
|
||
|
|
$this->fail[$this->current_record['type']]++;
|
||
|
|
array_push ($this->failed_citations, "Type: " .$this->current_record['type']
|
||
|
|
."; Cit:" .$this->current_record['citation']); }
|
||
|
|
else {
|
||
|
|
$this->success[$this->current_record['type']]++;
|
||
|
|
}
|
||
|
|
}
|
||
|
|
|
||
|
|
|
||
|
|
// Parses on which items the citation is referring. (and save it)
|
||
|
|
protected function parseReferences($block) {
|
||
|
|
// '1' means given var was cited
|
||
|
|
|
||
|
|
foreach ($this->items as $offset=>$item) {
|
||
|
|
if (intval($block[$offset]) == 1) {
|
||
|
|
$this->current_record['cited_var'][$item] = 1;
|
||
|
|
}
|
||
|
|
}
|
||
|
|
}
|
||
|
|
|
||
|
|
protected function cleanRecord() {
|
||
|
|
unset ($this->current_record);
|
||
|
|
$this->current_record = array(
|
||
|
|
'id_manual' => '',
|
||
|
|
'year' => '',
|
||
|
|
'cited_vars' => array (),
|
||
|
|
'type' => '',
|
||
|
|
'year_pub' => '',
|
||
|
|
'language'=> 2,
|
||
|
|
'citation' => '',
|
||
|
|
'citation_data' => '',
|
||
|
|
'author_data' => ''
|
||
|
|
);
|
||
|
|
}
|
||
|
|
|
||
|
|
protected function parseRecord ($record) {
|
||
|
|
$this->current_record['year'] = $record[0];
|
||
|
|
$this->current_record['id_manual'] = $record[1];
|
||
|
|
$this->current_record['type'] = $record [count($record)-3];
|
||
|
|
$this->current_record['year_pub'] = $record [count($record)-2];
|
||
|
|
$this->current_record['citation'] = $record [count($record)-1];
|
||
|
|
$this->current_record['cited_vars'] = $this->parseReferences(_import::_isolateItemColumns($record));
|
||
|
|
}
|
||
|
|
|
||
|
|
protected static function _isolateItemColumns ($record) {
|
||
|
|
// columns are:
|
||
|
|
// 0 - YEAR
|
||
|
|
// 1 - ID_MANUAL
|
||
|
|
// *** 2 ... n-3 item names ***
|
||
|
|
// n-2 pubtype
|
||
|
|
// n-1 pubyear
|
||
|
|
// n citation
|
||
|
|
|
||
|
|
// 2x right, remove last 3
|
||
|
|
for ($n = 1; $n <= 2; $n++) {
|
||
|
|
array_shift($record);
|
||
|
|
}
|
||
|
|
for ($n = 1; $n <= 3; $n++) {
|
||
|
|
array_pop($record);
|
||
|
|
}
|
||
|
|
return $record;
|
||
|
|
}
|
||
|
|
|
||
|
|
// parse first line of TXT and detect "brina" columns defined in brina_fiels
|
||
|
|
protected static function _isolateBrinaColumns ($record) {
|
||
|
|
|
||
|
|
foreach (_import::$brina_fields as $field_name) {
|
||
|
|
_import::$brina_offsets[$field_name] = array_search ($field_name, $record);
|
||
|
|
}
|
||
|
|
|
||
|
|
return;
|
||
|
|
}
|
||
|
|
|
||
|
|
|
||
|
|
|
||
|
|
protected function _parse_B_Affiliations ($record) {
|
||
|
|
// affiliation fields are
|
||
|
|
$fields = array ('Affil_1', 'Affil_2', 'Affil_3', 'Affil_4', 'Affil_5');
|
||
|
|
foreach ($fields as $ord=>$field) {
|
||
|
|
$id_brina_country = $record[_import::$brina_offsets[$field]];
|
||
|
|
|
||
|
|
if ($id_brina_country > 0) {
|
||
|
|
// check if we already have affiliation for this author
|
||
|
|
// please note author order in DB starts with 1, not 0 as here!!!
|
||
|
|
$author_order = $ord+1;
|
||
|
|
|
||
|
|
|
||
|
|
try {
|
||
|
|
$stmt = $this->PDO->prepare("UPDATE dict_pub_author, l_country, publication "
|
||
|
|
."SET dict_pub_author.id_country = l_country.id "
|
||
|
|
."WHERE "
|
||
|
|
."publication.id_manual = :id_manual AND publication.id = dict_pub_author.id_publication AND " // id_manual into ID
|
||
|
|
."dict_pub_author.`ord`=:author_order AND dict_pub_author.id_country IS NULL AND " // link to author order and update only if no country info yet
|
||
|
|
."l_country.brina_code = :brina_country_code"); // finally link to Brina country code.
|
||
|
|
|
||
|
|
$stmt->execute(array(
|
||
|
|
'id_manual' => $record[0] .$record[1], // 0 - year, 1 - id_manual
|
||
|
|
'author_order' => $author_order,
|
||
|
|
'brina_country_code' => $id_brina_country));
|
||
|
|
|
||
|
|
}
|
||
|
|
catch (exception $ex) {
|
||
|
|
common::except ('Err: ' .$ex .' in ' .__DIR__ .'/' .__FILE__ .':' .__LINE__);
|
||
|
|
}
|
||
|
|
}
|
||
|
|
}
|
||
|
|
}
|
||
|
|
|
||
|
|
|
||
|
|
|
||
|
|
|
||
|
|
/**
|
||
|
|
* Only for Brina file!
|
||
|
|
* @param type $record
|
||
|
|
*/
|
||
|
|
protected function _parse_B_Topics ($record) {
|
||
|
|
echo "<br>RECORD: " .print_r($record, true);
|
||
|
|
// first, remove all topics for this publication
|
||
|
|
try {
|
||
|
|
$stmt = $this->PDO->prepare("DELETE FROM dict_pub_topic WHERE id_publication IN (SELECT id FROM publication WHERE id_manual=:id_manual)"); // finally link to Brina country code.
|
||
|
|
$stmt->execute(array('id_manual' => $record[0] .$record[1]));
|
||
|
|
|
||
|
|
}
|
||
|
|
catch (exception $ex) {
|
||
|
|
common::except ('Err: ' .$ex .' in ' .__DIR__ .'/' .__FILE__ .':' .__LINE__);
|
||
|
|
}
|
||
|
|
|
||
|
|
// we need to include IDs from the table (don't have that in the table)
|
||
|
|
$fields = array (
|
||
|
|
1=>'T_Politics', 2=>'T_Citizen', 3=>'T_Welfare', 4=>'T_Transition', 5=>'T_Inequality',
|
||
|
|
6=>'T_Immigration',7=>'T_Nation', 8=>'T_Crime', 9=>'T_Economy', 10=>'T_SWB',
|
||
|
|
11=>'T_Health', 12=>'T_Culture',13=>'T_SCapital',14=>'T_Family', 15=>'T_Work',
|
||
|
|
16=>'T_Media', 17=>'T_Religion',18=>'T_Educ', 19=>'T_Age', 20=>'T_Gender',
|
||
|
|
21=>'T_Environ', 22=>'T_Europe', 23=>'T_Methods'); // all topic article is refferring to
|
||
|
|
foreach ($fields as $id_topic=>$field) {
|
||
|
|
|
||
|
|
// those are Y/N fields (1 means it works on that topic, 0 that it doesn't)
|
||
|
|
if (intval($record[_import::$brina_offsets[$field]]) == 1) {
|
||
|
|
|
||
|
|
|
||
|
|
// special case
|
||
|
|
if ($id_topic == 23) {
|
||
|
|
$id_topic = 99;
|
||
|
|
echo "Delam 99";
|
||
|
|
}
|
||
|
|
|
||
|
|
try {
|
||
|
|
$stmt = $this->PDO->prepare("INSERT INTO dict_pub_topic (id_publication, id_topic) (SELECT id, :id_topic FROM publication where id_manual=:id_manual)");
|
||
|
|
|
||
|
|
|
||
|
|
$stmt->execute(array(
|
||
|
|
'id_manual' => $record[0] .$record[1], // 0 - year, 1 - id_manual
|
||
|
|
'id_topic' => $id_topic));
|
||
|
|
|
||
|
|
}
|
||
|
|
catch (exception $ex) {
|
||
|
|
common::except ('Err: ' .$ex .' in ' .__DIR__ .'/' .__FILE__ .':' .__LINE__);
|
||
|
|
}
|
||
|
|
|
||
|
|
}
|
||
|
|
}
|
||
|
|
}
|
||
|
|
|
||
|
|
|
||
|
|
/**
|
||
|
|
* Only for Brina file!
|
||
|
|
* @param type $record
|
||
|
|
*/
|
||
|
|
protected function _parse_special_topics ($record) {
|
||
|
|
// first, we are looking only for special topics
|
||
|
|
$topics = array (49=>'Covid19');
|
||
|
|
|
||
|
|
// this is slow, but OK for 1-2 topics
|
||
|
|
foreach ($topics as $topic_id => $topic_name) {
|
||
|
|
try {
|
||
|
|
$stmt = $this->PDO->prepare("DELETE FROM dict_pub_topic WHERE id_topic=:id_topic"); // finally link to Brina country code.
|
||
|
|
$stmt->execute(array('id_topic' => $id_topic));
|
||
|
|
|
||
|
|
}
|
||
|
|
catch (exception $ex) {
|
||
|
|
common::except ('Err: ' .$ex .' in ' .__DIR__ .'/' .__FILE__ .':' .__LINE__);
|
||
|
|
}
|
||
|
|
}
|
||
|
|
|
||
|
|
// please make sure it only contains topic1, topic2
|
||
|
|
if (isset ($topics[trim($record[2])])) {
|
||
|
|
echo "Našel sem " .$record[2] ." v topic 1 <br>";
|
||
|
|
try {
|
||
|
|
$stmt = $this->PDO->prepare("INSERT INTO dict_pub_topic (id_publication, id_topic) (SELECT id, :id_topic FROM publication where id_manual=:id_manual)");
|
||
|
|
|
||
|
|
$stmt->execute(array(
|
||
|
|
'id_manual' => $record[0] .$record[1], // 0 - year, 1 - id_manual
|
||
|
|
'id_topic' => trim($record[2])));
|
||
|
|
|
||
|
|
}
|
||
|
|
catch (exception $ex) {
|
||
|
|
common::except ('Err: ' .$ex .' in ' .__DIR__ .'/' .__FILE__ .':' .__LINE__);
|
||
|
|
}
|
||
|
|
}
|
||
|
|
|
||
|
|
// please make sure it only contains topic1, topic2
|
||
|
|
if (isset ($topics[trim($record[3])])) {
|
||
|
|
echo "Našel sem " .$record[3] ." v topic 2 <br>";
|
||
|
|
try {
|
||
|
|
$stmt = $this->PDO->prepare("INSERT INTO dict_pub_topic (id_publication, id_topic) (SELECT id, :id_topic FROM publication where id_manual=:id_manual)");
|
||
|
|
|
||
|
|
$stmt->execute(array(
|
||
|
|
'id_manual' => $record[0] .$record[1], // 0 - year, 1 - id_manual
|
||
|
|
'id_topic' => trim($record[3])));
|
||
|
|
|
||
|
|
}
|
||
|
|
catch (exception $ex) {
|
||
|
|
common::except ('Err: ' .$ex .' in ' .__DIR__ .'/' .__FILE__ .':' .__LINE__);
|
||
|
|
}
|
||
|
|
}
|
||
|
|
|
||
|
|
}
|
||
|
|
|
||
|
|
|
||
|
|
|
||
|
|
// this function marks topic1 and topic2 as the most important (weight 1 and 2)
|
||
|
|
protected function _top_B_topics ($record) {
|
||
|
|
|
||
|
|
// we need to include IDs from the table (don't have that in the table)
|
||
|
|
$fields = array (1=>"TOPIC11", 2=>"TOPIC22");
|
||
|
|
foreach ($fields as $weight=>$field) {
|
||
|
|
$id_topic = $record[_import::$brina_offsets[$field]];
|
||
|
|
|
||
|
|
if ($id_topic>0) {
|
||
|
|
try {
|
||
|
|
$stmt = $this->PDO->prepare("UPDATE publication, dict_pub_topic SET dict_pub_topic.weight=:weight WHERE dict_pub_topic.id_publication=publication.id AND publication.id_manual=:id_manual AND dict_pub_topic.id_topic=:id_topic");
|
||
|
|
$stmt->execute(array(
|
||
|
|
'weight' => $weight, // 0 - year, 1 - id_manual
|
||
|
|
'id_manual' => $record[0] .$record[1], // 0 - year, 1 - id_manual
|
||
|
|
'id_topic' => $id_topic));
|
||
|
|
|
||
|
|
}
|
||
|
|
catch (exception $ex) {
|
||
|
|
common::except ('Err: ' .$ex .' in ' .__DIR__ .'/' .__FILE__ .':' .__LINE__);
|
||
|
|
}
|
||
|
|
|
||
|
|
}
|
||
|
|
}
|
||
|
|
}
|
||
|
|
|
||
|
|
// create list of ids for fields (from the table). This is here to speed up the process
|
||
|
|
// (generate list only once instead of N times where N= num recs
|
||
|
|
public function _round_fields2ids() {
|
||
|
|
|
||
|
|
foreach (_import::$round_fields as $round) {
|
||
|
|
$field = explode ("_", $field);
|
||
|
|
|
||
|
|
try {
|
||
|
|
$stmt = $this->PDO->prepare("SELECT id FROM l_ess_round WHERE name=:name");
|
||
|
|
$stmt->execute(array(substr ($field[0], 1)));
|
||
|
|
|
||
|
|
// this instead of rowCount to make in compatible with non-mysql DB
|
||
|
|
if ($r = $stmt->fetch(PDO::FETCH_NUM)) {
|
||
|
|
_import::$round_ids[$round] = $r[0];
|
||
|
|
}
|
||
|
|
}
|
||
|
|
catch (exception $ex) {
|
||
|
|
common::except ('Err: ' .$ex .' in ' .__DIR__ .'/' .__FILE__ .':' .__LINE__);
|
||
|
|
}
|
||
|
|
}
|
||
|
|
return;
|
||
|
|
|
||
|
|
}
|
||
|
|
|
||
|
|
protected function _parse_B_Rounds ($record) {
|
||
|
|
|
||
|
|
foreach (_import::$round_ids as $round=>$id_round) {
|
||
|
|
// those are Y/N fields (1 means it works on that topic, 0 that it doesn't)
|
||
|
|
if (intval($record[_import::$brina_offsets[$round]]) == 1) {
|
||
|
|
try {
|
||
|
|
$stmt = $this->PDO->prepare("REPLACE INTO dict_pub_round (id_publication, id_round) (SELECT id, :id_round FROM publication where id_manual=:id_manual)");
|
||
|
|
|
||
|
|
$stmt->execute(array(
|
||
|
|
'id_manual' => $record[0] .$record[1], // 0 - year, 1 - id_manual
|
||
|
|
'id_round' => $id_round));
|
||
|
|
|
||
|
|
}
|
||
|
|
catch (exception $ex) {
|
||
|
|
common::except ('Err: ' .$ex .' in ' .__DIR__ .'/' .__FILE__ .':' .__LINE__);
|
||
|
|
}
|
||
|
|
|
||
|
|
}
|
||
|
|
}
|
||
|
|
}
|
||
|
|
|
||
|
|
protected function _parse_B_Modules ($record) {
|
||
|
|
|
||
|
|
foreach (_import::$ess_modules as $id_module=>$module) {
|
||
|
|
// those are Y/N fields (1 means it works on that topic, 0 that it doesn't)
|
||
|
|
if (intval($record[_import::$brina_offsets[$module]]) == 1) {
|
||
|
|
try {
|
||
|
|
$stmt = $this->PDO->prepare("REPLACE INTO dict_pub_module (id_publication, id_module) (SELECT id, :id_module FROM publication where id_manual=:id_manual)");
|
||
|
|
|
||
|
|
$stmt->execute(array(
|
||
|
|
'id_manual' => $record[0] .$record[1], // 0 - year, 1 - id_manual
|
||
|
|
'id_module' => $id_module));
|
||
|
|
|
||
|
|
}
|
||
|
|
catch (exception $ex) {
|
||
|
|
common::except ('Err: ' .$ex .' in ' .__DIR__ .'/' .__FILE__ .':' .__LINE__);
|
||
|
|
}
|
||
|
|
|
||
|
|
}
|
||
|
|
}
|
||
|
|
}
|
||
|
|
|
||
|
|
protected function _parse_B_jFields ($record) {
|
||
|
|
|
||
|
|
// this is always JField
|
||
|
|
// those are Y/N fields (1 means it works on that topic, 0 that it doesn't)
|
||
|
|
$id_field = intval($record[_import::$brina_offsets['JField']]);
|
||
|
|
if ($id_field > 0) {
|
||
|
|
|
||
|
|
$id_journal = 0;
|
||
|
|
// is it a jornal, do we have it?
|
||
|
|
try {
|
||
|
|
$stmt = $this->PDO->prepare("select p_journalArticle.id_journal FROM p_journalArticle, publication WHERE publication.id_parent=p_journalArticle.id AND publication.id_manual=:id_manual AND publication.type=1");
|
||
|
|
$stmt->execute(array($record[0] .$record[1]));
|
||
|
|
|
||
|
|
if ($r = $stmt->fetch(PDO::FETCH_NUM)) {
|
||
|
|
$id_journal = $r[0];
|
||
|
|
|
||
|
|
try {
|
||
|
|
$stmt = $this->PDO->prepare("REPLACE INTO dict_journal_field (id_journal, id_field) VALUES (:id_journal, :id_field)");
|
||
|
|
|
||
|
|
$stmt->execute(array(
|
||
|
|
'id_journal' => $id_journal,
|
||
|
|
'id_field' => $id_field));
|
||
|
|
|
||
|
|
}
|
||
|
|
catch (exception $ex) {
|
||
|
|
common::except ('Err: ' .$ex .' in ' .__DIR__ .'/' .__FILE__ .':' .__LINE__);
|
||
|
|
}
|
||
|
|
|
||
|
|
}
|
||
|
|
}
|
||
|
|
catch (exception $ex) {
|
||
|
|
common::except ('Err: ' .$ex .' in ' .__DIR__ .'/' .__FILE__ .':' .__LINE__);
|
||
|
|
}
|
||
|
|
}
|
||
|
|
}
|
||
|
|
|
||
|
|
}
|
||
|
|
|
||
|
|
?>
|