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Beginning to work on R markdown.

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Please note, "colortools" is not available on CRAN anymore.
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May Doušak 2023-01-13 15:44:26 +01:00
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README.md
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@ -9,17 +9,31 @@ Version: 0.1b
First working R version, translated from Python. First working R version, translated from Python.
No grouping per interviewer. No grouping per interviewer.
## What's here
This is a script that opens a database containing (at least) following columns: ## How to use the code
There are two ways:
a) running it standalone from R
b) use the UIB Tool to run it
Prepare the database so it contains the necessary fields and you're good to go.
## Accepted input files
Currently, it only works on CSV files that contain (at least) the following columns:
- ID (integer) - ID (integer)
- VSI1 (see VSI documentation) - VSI1 (see VSI documentation)
- VSI2 (see VSI documentation) - VSI2 (see VSI documentation)
- VSI3 (see VSI documentation) - VSI3 (see VSI documentation)
This script is made by two files:
## What's here
There are two files:
- R file (original code to check things) - R file (original code to check things)
- Rmd file (makes a PDF report) - Rmd file (makes a PDF report)

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\begin{titlepage}
\raggedleft
\includegraphics[width = 6cm]{components/ESSlogo.png}
\vfill
\raggedright
{\bf \fontsize{40pt}{50pt}\selectfont Analysis of Virtual Surrounding Impression}\\[1 cm]
\vfill
\begin{center}\large \sl
European Social Survey \\
Core Scientific Team
\end{center}
\raggedright
{\large \today}\\
Tool version {`r params$version`}
\end{titlepage}

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<?xml version="1.0" encoding="utf-8"?>
<style xmlns="http://purl.org/net/xbiblio/csl" class="in-text" version="1.0" demote-non-dropping-particle="never" page-range-format="expanded">
<info>
<title>American Psychological Association 6th edition</title>
<title-short>APA</title-short>
<id>http://www.zotero.org/styles/apa</id>
<link href="http://www.zotero.org/styles/apa" rel="self"/>
<link href="http://owl.english.purdue.edu/owl/resource/560/01/" rel="documentation"/>
<author>
<name>Simon Kornblith</name>
<email>simon@simonster.com</email>
</author>
<contributor>
<name>Bruce D'Arcus</name>
</contributor>
<contributor>
<name>Curtis M. Humphrey</name>
</contributor>
<contributor>
<name>Richard Karnesky</name>
<email>karnesky+zotero@gmail.com</email>
<uri>http://arc.nucapt.northwestern.edu/Richard_Karnesky</uri>
</contributor>
<contributor>
<name>Sebastian Karcher</name>
</contributor>
<contributor>
<name> Brenton M. Wiernik</name>
<email>zotero@wiernik.org</email>
</contributor>
<category citation-format="author-date"/>
<category field="psychology"/>
<category field="generic-base"/>
<updated>2018-01-19T15:04:50+00:00</updated>
<rights license="http://creativecommons.org/licenses/by-sa/3.0/">This work is licensed under a Creative Commons Attribution-ShareAlike 3.0 License</rights>
</info>
<locale xml:lang="en">
<terms>
<term name="editortranslator" form="short">
<single>ed. &amp; trans.</single>
<multiple>eds. &amp; trans.</multiple>
</term>
<term name="translator" form="short">
<single>trans.</single>
<multiple>trans.</multiple>
</term>
</terms>
</locale>
<macro name="container-contributors">
<choose>
<if type="chapter paper-conference entry-dictionary entry-encyclopedia" match="any">
<group delimiter=", ">
<names variable="container-author" delimiter=", ">
<name and="symbol" initialize-with=". " delimiter=", "/>
<label form="short" prefix=" (" text-case="title" suffix=")"/>
</names>
<names variable="editor translator" delimiter=", ">
<name and="symbol" initialize-with=". " delimiter=", "/>
<label form="short" prefix=" (" text-case="title" suffix=")"/>
</names>
</group>
</if>
</choose>
</macro>
<macro name="secondary-contributors">
<choose>
<if type="article-journal chapter paper-conference entry-dictionary entry-encyclopedia" match="none">
<group delimiter=", " prefix=" (" suffix=")">
<names variable="container-author" delimiter=", ">
<name and="symbol" initialize-with=". " delimiter=", "/>
<label form="short" prefix=", " text-case="title"/>
</names>
<names variable="editor translator" delimiter=", ">
<name and="symbol" initialize-with=". " delimiter=", "/>
<label form="short" prefix=", " text-case="title"/>
</names>
</group>
</if>
</choose>
</macro>
<macro name="author">
<names variable="author">
<name name-as-sort-order="all" and="symbol" sort-separator=", " initialize-with=". " delimiter=", " delimiter-precedes-last="always"/>
<label form="short" prefix=" (" suffix=")" text-case="capitalize-first"/>
<substitute>
<names variable="editor"/>
<names variable="translator"/>
<choose>
<if type="report">
<text variable="publisher"/>
<text macro="title"/>
</if>
<else>
<text macro="title"/>
</else>
</choose>
</substitute>
</names>
</macro>
<macro name="author-short">
<choose>
<if type="patent" variable="number" match="all">
<text macro="patent-number"/>
</if>
<else>
<names variable="author">
<name form="short" and="symbol" delimiter=", " initialize-with=". "/>
<substitute>
<names variable="editor"/>
<names variable="translator"/>
<choose>
<if type="report">
<text variable="publisher"/>
<text variable="title" form="short" font-style="italic"/>
</if>
<else-if type="legal_case">
<text variable="title" font-style="italic"/>
</else-if>
<else-if type="book graphic motion_picture song" match="any">
<text variable="title" form="short" font-style="italic"/>
</else-if>
<else-if type="bill legislation" match="any">
<text variable="title" form="short"/>
</else-if>
<else-if variable="reviewed-author">
<choose>
<if variable="reviewed-title" match="none">
<text variable="title" form="short" font-style="italic" prefix="Review of "/>
</if>
<else>
<text variable="title" form="short" quotes="true"/>
</else>
</choose>
</else-if>
<else>
<text variable="title" form="short" quotes="true"/>
</else>
</choose>
</substitute>
</names>
</else>
</choose>
</macro>
<macro name="patent-number">
<!-- genre: U.S. Patent number: 123,445-->
<group delimiter=" ">
<group delimiter=" ">
<text variable="genre"/>
<text term="issue" form="short" text-case="capitalize-first"/>
</group>
<text variable="number"/>
</group>
</macro>
<macro name="access">
<choose>
<if type="thesis report" match="any">
<choose>
<if variable="DOI" match="any">
<text variable="DOI" prefix="https://doi.org/"/>
</if>
<else-if variable="URL" match="any">
<group>
<text term="retrieved" text-case="capitalize-first" suffix=" "/>
<text term="from" suffix=" "/>
<text variable="URL"/>
</group>
</else-if>
<else-if variable="archive" match="any">
<group>
<text term="retrieved" text-case="capitalize-first" suffix=" "/>
<text term="from" suffix=" "/>
<text variable="archive" suffix="."/>
<text variable="archive_location" prefix=" (" suffix=")"/>
</group>
</else-if>
</choose>
</if>
<else>
<choose>
<if variable="DOI">
<text variable="DOI" prefix="https://doi.org/"/>
</if>
<else>
<choose>
<if type="post post-weblog webpage" match="any">
<group delimiter=" ">
<text term="retrieved" text-case="capitalize-first" suffix=" "/>
<group>
<date variable="accessed" form="text" suffix=", "/>
</group>
<text term="from"/>
<text variable="URL"/>
</group>
</if>
<else>
<group>
<text term="retrieved" text-case="capitalize-first" suffix=" "/>
<text term="from" suffix=" "/>
<text variable="URL"/>
</group>
</else>
</choose>
</else>
</choose>
</else>
</choose>
</macro>
<macro name="title">
<choose>
<if type="book dataset graphic manuscript motion_picture report song speech thesis" match="any">
<choose>
<if variable="version" type="book" match="all">
<!---This is a hack until we have a computer program type -->
<text variable="title"/>
</if>
<else>
<text variable="title" font-style="italic"/>
</else>
</choose>
</if>
<else-if variable="reviewed-author">
<choose>
<if variable="reviewed-title">
<group delimiter=" ">
<text variable="title"/>
<group delimiter=", " prefix="[" suffix="]">
<text variable="reviewed-title" font-style="italic" prefix="Review of "/>
<names variable="reviewed-author" delimiter=", ">
<label form="verb-short" suffix=" "/>
<name and="symbol" initialize-with=". " delimiter=", "/>
</names>
</group>
</group>
</if>
<else>
<!-- assume `title` is title of reviewed work -->
<group delimiter=", " prefix="[" suffix="]">
<text variable="title" font-style="italic" prefix="Review of "/>
<names variable="reviewed-author" delimiter=", ">
<label form="verb-short" suffix=" "/>
<name and="symbol" initialize-with=". " delimiter=", "/>
</names>
</group>
</else>
</choose>
</else-if>
<else-if type="patent" variable="number" match="all">
<text macro="patent-number" font-style="italic"/>
</else-if>
<else>
<text variable="title"/>
</else>
</choose>
</macro>
<macro name="title-plus-extra">
<text macro="title"/>
<choose>
<if type="report thesis" match="any">
<group prefix=" (" suffix=")" delimiter=", ">
<group delimiter=" ">
<choose>
<if variable="genre" match="any">
<text variable="genre"/>
</if>
<else>
<text variable="collection-title"/>
</else>
</choose>
<text variable="number" prefix="No. "/>
</group>
<group delimiter=" ">
<text term="version" text-case="capitalize-first"/>
<text variable="version"/>
</group>
<text macro="edition"/>
</group>
</if>
<else-if type="post-weblog webpage" match="any">
<text variable="genre" prefix=" [" suffix="]"/>
</else-if>
<else-if variable="version">
<group delimiter=" " prefix=" (" suffix=")">
<text term="version" text-case="capitalize-first"/>
<text variable="version"/>
</group>
</else-if>
</choose>
<text macro="format" prefix=" [" suffix="]"/>
</macro>
<macro name="format">
<choose>
<if match="any" variable="medium">
<text variable="medium" text-case="capitalize-first"/>
</if>
<else-if type="dataset" match="any">
<choose>
<if variable="genre">
<text variable="genre" text-case="capitalize-first"/>
</if>
<else>
<!-- This should be localized -->
<text value="Data set"/>
</else>
</choose>
</else-if>
</choose>
</macro>
<macro name="publisher">
<choose>
<if type="report" match="any">
<group delimiter=": ">
<text variable="publisher-place"/>
<text variable="publisher"/>
</group>
</if>
<else-if type="thesis" match="any">
<group delimiter=", ">
<text variable="publisher"/>
<text variable="publisher-place"/>
</group>
</else-if>
<else-if type="patent">
<group delimiter=": ">
<text variable="publisher-place"/>
<choose>
<if variable="publisher">
<text variable="publisher"/>
</if>
<else>
<text variable="authority"/>
</else>
</choose>
</group>
</else-if>
<else-if type="post-weblog webpage" match="none">
<group delimiter=", ">
<choose>
<if variable="event version" type="speech dataset motion_picture" match="none">
<!-- Including version is to avoid printing the programming language for computerProgram /-->
<text variable="genre"/>
</if>
</choose>
<choose>
<if type="article-journal article-magazine article-newspaper" match="none">
<group delimiter=": ">
<choose>
<if variable="publisher-place">
<text variable="publisher-place"/>
</if>
<else>
<text variable="event-place"/>
</else>
</choose>
<text variable="publisher"/>
</group>
</if>
</choose>
</group>
</else-if>
</choose>
</macro>
<macro name="event">
<choose>
<if variable="container-title" match="none">
<choose>
<if variable="event">
<choose>
<if variable="genre" match="none">
<text term="presented at" text-case="capitalize-first" suffix=" "/>
<text variable="event"/>
</if>
<else>
<group delimiter=" ">
<text variable="genre" text-case="capitalize-first"/>
<text term="presented at"/>
<text variable="event"/>
</group>
</else>
</choose>
</if>
<else-if type="speech">
<text variable="genre" text-case="capitalize-first"/>
</else-if>
</choose>
</if>
</choose>
</macro>
<macro name="issued">
<choose>
<if type="bill legal_case legislation" match="none">
<choose>
<if variable="issued">
<group prefix=" (" suffix=")">
<date variable="issued">
<date-part name="year"/>
</date>
<text variable="year-suffix"/>
<choose>
<if type="speech" match="any">
<date variable="issued">
<date-part prefix=", " name="month"/>
</date>
</if>
<else-if type="article-journal bill book chapter graphic legal_case legislation motion_picture paper-conference report song dataset" match="none">
<date variable="issued">
<date-part prefix=", " name="month"/>
<date-part prefix=" " name="day"/>
</date>
</else-if>
</choose>
</group>
</if>
<else-if variable="status">
<group prefix=" (" suffix=")">
<text variable="status"/>
<text variable="year-suffix" prefix="-"/>
</group>
</else-if>
<else>
<group prefix=" (" suffix=")">
<text term="no date" form="short"/>
<text variable="year-suffix" prefix="-"/>
</group>
</else>
</choose>
</if>
</choose>
</macro>
<macro name="issued-sort">
<choose>
<if type="article-journal bill book chapter graphic legal_case legislation motion_picture paper-conference report song dataset" match="none">
<date variable="issued">
<date-part name="year"/>
<date-part name="month"/>
<date-part name="day"/>
</date>
</if>
<else>
<date variable="issued">
<date-part name="year"/>
</date>
</else>
</choose>
</macro>
<macro name="issued-year">
<choose>
<if variable="issued">
<group delimiter="/">
<date variable="original-date">
<date-part name="year"/>
</date>
<group>
<date variable="issued">
<date-part name="year"/>
</date>
<text variable="year-suffix"/>
</group>
</group>
</if>
<else-if variable="status">
<text variable="status"/>
<text variable="year-suffix" prefix="-"/>
</else-if>
<else>
<text term="no date" form="short"/>
<text variable="year-suffix" prefix="-"/>
</else>
</choose>
</macro>
<macro name="edition">
<choose>
<if is-numeric="edition">
<group delimiter=" ">
<number variable="edition" form="ordinal"/>
<text term="edition" form="short"/>
</group>
</if>
<else>
<text variable="edition"/>
</else>
</choose>
</macro>
<macro name="locators">
<choose>
<if type="article-journal article-magazine" match="any">
<group prefix=", " delimiter=", ">
<group>
<text variable="volume" font-style="italic"/>
<text variable="issue" prefix="(" suffix=")"/>
</group>
<text variable="page"/>
</group>
<choose>
<!--for advanced online publication-->
<if variable="issued">
<choose>
<if variable="page issue" match="none">
<text variable="status" prefix=". "/>
</if>
</choose>
</if>
</choose>
</if>
<else-if type="article-newspaper">
<group delimiter=" " prefix=", ">
<label variable="page" form="short"/>
<text variable="page"/>
</group>
</else-if>
<else-if type="book graphic motion_picture report song chapter paper-conference entry-encyclopedia entry-dictionary" match="any">
<group prefix=" (" suffix=")" delimiter=", ">
<choose>
<if type="report" match="none">
<!-- edition for report is included in title-plus-extra /-->
<text macro="edition"/>
</if>
</choose>
<choose>
<if variable="volume" match="any">
<group>
<text term="volume" form="short" text-case="capitalize-first" suffix=" "/>
<number variable="volume" form="numeric"/>
</group>
</if>
<else>
<group>
<text term="volume" form="short" plural="true" text-case="capitalize-first" suffix=" "/>
<number variable="number-of-volumes" form="numeric" prefix="1&#8211;"/>
</group>
</else>
</choose>
<group>
<label variable="page" form="short" suffix=" "/>
<text variable="page"/>
</group>
</group>
</else-if>
<else-if type="legal_case">
<group prefix=" (" suffix=")" delimiter=" ">
<text variable="authority"/>
<choose>
<if variable="container-title" match="any">
<!--Only print year for cases published in reporters-->
<date variable="issued" form="numeric" date-parts="year"/>
</if>
<else>
<date variable="issued" form="text"/>
</else>
</choose>
</group>
</else-if>
<else-if type="bill legislation" match="any">
<date variable="issued" prefix=" (" suffix=")">
<date-part name="year"/>
</date>
</else-if>
</choose>
</macro>
<macro name="citation-locator">
<group>
<choose>
<if locator="chapter">
<label variable="locator" form="long" text-case="capitalize-first"/>
</if>
<else>
<label variable="locator" form="short"/>
</else>
</choose>
<text variable="locator" prefix=" "/>
</group>
</macro>
<macro name="container">
<choose>
<if type="post-weblog webpage" match="none">
<group>
<choose>
<if type="chapter paper-conference entry-encyclopedia" match="any">
<text term="in" text-case="capitalize-first" suffix=" "/>
</if>
</choose>
<group delimiter=", ">
<text macro="container-contributors"/>
<text macro="secondary-contributors"/>
<text macro="container-title"/>
</group>
</group>
</if>
</choose>
</macro>
<macro name="container-title">
<choose>
<if type="article article-journal article-magazine article-newspaper" match="any">
<text variable="container-title" font-style="italic" text-case="title"/>
</if>
<else-if type="bill legal_case legislation" match="none">
<text variable="container-title" font-style="italic"/>
</else-if>
</choose>
</macro>
<macro name="legal-cites">
<choose>
<if type="legal_case" match="any">
<group prefix=", " delimiter=" ">
<choose>
<if variable="container-title">
<text variable="volume"/>
<text variable="container-title"/>
<group delimiter=" ">
<!--change to label variable="section" as that becomes available -->
<text term="section" form="symbol"/>
<text variable="section"/>
</group>
<text variable="page"/>
</if>
<else>
<text variable="number" prefix="No. "/>
</else>
</choose>
</group>
</if>
<else-if type="bill legislation" match="any">
<group delimiter=", " prefix=", ">
<choose>
<if variable="number">
<!--There's a public law number-->
<text variable="number" prefix="Pub. L. No. "/>
<group delimiter=" ">
<!--change to label variable="section" as that becomes available -->
<text term="section" form="symbol"/>
<text variable="section"/>
</group>
<group delimiter=" ">
<text variable="volume"/>
<text variable="container-title"/>
<text variable="page-first"/>
</group>
</if>
<else>
<group delimiter=" ">
<text variable="volume"/>
<text variable="container-title"/>
<!--change to label variable="section" as that becomes available -->
<text term="section" form="symbol"/>
<text variable="section"/>
</group>
</else>
</choose>
</group>
</else-if>
</choose>
</macro>
<macro name="original-date">
<choose>
<if type="bill legal_case legislation" match="none">
<choose>
<if variable="original-date">
<group prefix=" (" suffix=")" delimiter=" ">
<!---This should be localized-->
<text value="Original work published"/>
<choose>
<if type="speech" match="any">
<date variable="original-date" delimiter=" ">
<date-part name="month"/>
<date-part name="year"/>
</date>
</if>
<else-if type="article-journal bill book chapter graphic legal_case legislation motion_picture paper-conference report song dataset" match="none">
<date variable="original-date" form="text"/>
</else-if>
<else>
<date variable="original-date">
<date-part name="year"/>
</date>
</else>
</choose>
</group>
</if>
</choose>
</if>
</choose>
</macro>
<citation et-al-min="6" et-al-use-first="1" et-al-subsequent-min="3" et-al-subsequent-use-first="1" disambiguate-add-year-suffix="true" disambiguate-add-names="true" disambiguate-add-givenname="true" collapse="year" givenname-disambiguation-rule="primary-name">
<sort>
<key macro="author"/>
<key macro="issued-sort"/>
</sort>
<layout prefix="(" suffix=")" delimiter="; ">
<group delimiter=", ">
<text macro="author-short"/>
<text macro="issued-year"/>
<text macro="citation-locator"/>
</group>
</layout>
</citation>
<bibliography hanging-indent="true" et-al-min="8" et-al-use-first="6" et-al-use-last="true" entry-spacing="0" line-spacing="2">
<sort>
<key macro="author"/>
<key macro="issued-sort" sort="ascending"/>
<key macro="title"/>
</sort>
<layout>
<group suffix=".">
<group delimiter=". ">
<text macro="author"/>
<text macro="issued"/>
<text macro="title-plus-extra"/>
<text macro="container"/>
</group>
<text macro="legal-cites"/>
<text macro="locators"/>
<group delimiter=", " prefix=". ">
<text macro="event"/>
<text macro="publisher"/>
</group>
</group>
<text macro="access" prefix=" "/>
<text macro="original-date" prefix=" "/>
</layout>
</bibliography>
</style>

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components/countries.csv Normal file
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cntry;Country;CountryName
AL;Albania;Albania
AT;Austria;Austria
BE;Belgium;Belgium
BG;Bulgaria;Bulgaria
CH;Switzerland;Switzerland
CY;Cyprus;Cyprus
CZ;Czech Republic;the Czech Republic
DE;Germany;Germany
DK;Denmark;Denmark
EE;Estonia;Estonia
ES;Spain;Spain
FI;Finland;Finland
FR;France;France
GB;United Kingdom;the United Kingdom
GR;Greece;Greece
HR;Croatia;Croatia
HU;Hungary;Hungary
IE;Ireland;Ireland
IL;Israel;Israel
IS;Iceland;Iceland
IT;Italy;Italy
LT;Lithuania;Lithuania
LU;Luxembourg;Luxembourg
LV;Latvia;Latvia
NL;Netherlands;the Netherlands
NO;Norway;Norway
PL;Poland;Poland
PT;Portugal;Portugal
RO;Romania;Romania
RS;Serbia;Serbia
RU;Russian Federation;the Russian Federation
SE;Sweden;Sweden
SI;Slovenia;Slovenia
SK;Slovakia;Slovakia
TR;Turkey;Turkey
UA;Ukraine;Ukraine
XK;Kosovo;Kosovo
1 cntry Country CountryName
2 AL Albania Albania
3 AT Austria Austria
4 BE Belgium Belgium
5 BG Bulgaria Bulgaria
6 CH Switzerland Switzerland
7 CY Cyprus Cyprus
8 CZ Czech Republic the Czech Republic
9 DE Germany Germany
10 DK Denmark Denmark
11 EE Estonia Estonia
12 ES Spain Spain
13 FI Finland Finland
14 FR France France
15 GB United Kingdom the United Kingdom
16 GR Greece Greece
17 HR Croatia Croatia
18 HU Hungary Hungary
19 IE Ireland Ireland
20 IL Israel Israel
21 IS Iceland Iceland
22 IT Italy Italy
23 LT Lithuania Lithuania
24 LU Luxembourg Luxembourg
25 LV Latvia Latvia
26 NL Netherlands the Netherlands
27 NO Norway Norway
28 PL Poland Poland
29 PT Portugal Portugal
30 RO Romania Romania
31 RS Serbia Serbia
32 RU Russian Federation the Russian Federation
33 SE Sweden Sweden
34 SI Slovenia Slovenia
35 SK Slovakia Slovakia
36 TR Turkey Turkey
37 UA Ukraine Ukraine
38 XK Kosovo Kosovo

47
components/styles.tex Normal file
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@ -0,0 +1,47 @@
\usepackage{placeins}
\usepackage{booktabs}
\usepackage{array}
\usepackage{chngcntr}
\usepackage{color}
\usepackage{titlesec}
\usepackage{titling}
\usepackage{caption}
\usepackage[bottom]{footmisc}
\usepackage[justification = centering]{caption}
\usepackage{lscape}
\usepackage{pdflscape}
\usepackage{longtable}
\usepackage{threeparttable}
\usepackage{nopageno}
\usepackage{footnote}
\counterwithin{figure}{section}
\counterwithin{table}{section}
\definecolor{ESSPink}{rgb}{0.91,0.2,0.32}
\titleformat
{\section}
{\bf \LARGE \sc \color{ESSPink}}
{\rlap{\thesection}\hspace{1cm}}
{0pt}
{}
[{\titlerule[2pt]}]
\titleformat
{\subsection}
{\bf \large \sc}
{\rlap{\thesubsection}\hspace{1cm}}
{0pt}
{}
\newcommand*{\secref}[1]{Section~\ref{#1}}
\captionsetup[figure]{labelfont= {color = ESSPink, bf}, labelsep = space}
\captionsetup[table]{labelfont= {color = ESSPink, bf}, labelsep = space}
\let\stdsection\section
\renewcommand{\section}{\FloatBarrier\clearpage\FloatBarrier\stdsection}
\newcommand{\blandscape}{\begin{landscape}}
\newcommand{\elandscape}{\end{landscape}}

1
demo_data/.~lock.inwer_file.csv# Normal file
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@ -0,0 +1 @@
May Doušak,may,FDV,13.01.2023 14:25,file:///home/may/.config/libreoffice/4;

28
demo_data/inwer_file.csv Normal file
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@ -0,0 +1,28 @@
"idno";"cntry";"intnum"
1;"SI";1
2;"SI";1
3;"SI";1
4;"SI";1
5;"SI";1
5;"SI";2
6;"SI";2
7;"SI";2
8;"SI";2
10;"SI";2
11;"SI";3
12;"SI";3
13;"SI";3
14;"SI";3
15;"SI";3
16;"SI";4
17;"SI";4
18;"SI";4
19;"SI";4
20;"SI";4
21;"SI";5
22;"SI";5
23;"SI";5
24;"SI";5
25;"SI";5
26;"SI";6
27;"SI";6
1 idno cntry intnum
2 1 SI 1
3 2 SI 1
4 3 SI 1
5 4 SI 1
6 5 SI 1
7 5 SI 2
8 6 SI 2
9 7 SI 2
10 8 SI 2
11 10 SI 2
12 11 SI 3
13 12 SI 3
14 13 SI 3
15 14 SI 3
16 15 SI 3
17 16 SI 4
18 17 SI 4
19 18 SI 4
20 19 SI 4
21 20 SI 4
22 21 SI 5
23 22 SI 5
24 23 SI 5
25 24 SI 5
26 25 SI 5
27 26 SI 6
28 27 SI 6

28
demo_data/main.csv Normal file
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@ -0,0 +1,28 @@
"idno";"cntry";"VSI1";"VSI2";"VSI3"
1;"SI";"x0e11dcb6d02d45522908aa022d7b187aa11d120bb843255bc7ccb62a78dd4dfc1eee8e5affda4df";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df"
2;"SI";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df"
3;"SI";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df"
4;"SI";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df"
5;"SI";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df"
5;"SI";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df"
6;"SI";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df"
7;"SI";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df"
8;"SI";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df"
10;"SI";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df"
11;"SI";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df"
12;"SI";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df"
13;"SI";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df"
14;"SI";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df"
15;"SI";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df"
16;"SI";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df"
17;"SI";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df"
18;"SI";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df"
19;"SI";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df"
20;"SI";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df"
21;"SI";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df"
22;"SI";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df"
23;"SI";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df"
24;"SI";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df"
25;"SI";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df"
26;"SI";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df"
27;"SI";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df";"d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df"
1 idno cntry VSI1 VSI2 VSI3
2 1 SI x0e11dcb6d02d45522908aa022d7b187aa11d120bb843255bc7ccb62a78dd4dfc1eee8e5affda4df d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df
3 2 SI d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df
4 3 SI d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df
5 4 SI d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df
6 5 SI d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df
7 5 SI d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df
8 6 SI d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df
9 7 SI d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df
10 8 SI d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df
11 10 SI d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df
12 11 SI d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df
13 12 SI d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df
14 13 SI d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df
15 14 SI d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df
16 15 SI d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df
17 16 SI d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df d0e11dcb6d02d455229087c022d7b187aa11d120a4843255bc7ecb62a78da4dfc1e2e8e5a78da4df
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---
output:
pdf_document:
includes:
in_header: ./components/styles.tex
number_sections: TRUE
latex_engine: xelatex
fig_caption: yes
fig_width: 4
fig_height: 3
keep_tex: TRUE
header-includes:
- \usepackage{titling}
- \setlength{\droptitle}{5em}
papersize: a4paper
fontsize: 11pt
mainfont: Arial
geometry: margin = 3cm
subparagraph: TRUE
graphics: yes
csl: ./components/apa.csl
link-citations: yes
params:
mainFile: ""
intFile: ""
version: "0.2"
---
```{r setup, include = FALSE, error=TRUE}
library(knitr)
#library(kableExtra)
knitr::opts_chunk$set(echo = TRUE, results = "hide", message = TRUE, dev = "cairo_pdf", warning = TRUE)
knitr::opts_chunk$set(fig.pos = 'H')
options(knitr.table.format = "latex", knitr.kable.NA = "")
Sys.setlocale("LC_ALL","English")
```
```{r setup2, include = FALSE,, error=T, warning=T, message=T}
library(here)
library(foreign)
library(dplyr)
library(psych)
library(ggplot2)
library(lubridate)
library(wesanderson)
#library(colortools) # adjacent works
library(ggthemes) # theme_tufte works
library(varhandle) # coercing factor to numeric variables
library(naniar) # for replacing values with missings
# for tables
library(knitr)
#New packages:
library(cowplot)
library(tibble)
```
```{r theme, include=FALSE, error=TRUE}
ESSred <- rgb(.91, .20, .32)
ESSgreen <- rgb(.14, .62, .51)
ESSblue <- rgb(0, .25, .48)
ESSColors <- unique(c(adjacent(ESSred, plot = F), square(ESSred, plot = F)))
ESSColors <- c(ESSColors, ESSgreen, ESSblue)
# pizza(ESSColors)
themeESS <- theme_tufte(base_size = 9, base_family = "Calibri") +
theme(axis.title = element_text(size = 9, face = "plain"),
axis.text = element_text(size = 9),
axis.line.x = element_line(),
plot.title = element_blank(),
legend.title = element_blank(),
legend.text = element_text(size = 9),
strip.text = element_text(size = 9, face = "bold"),
legend.position = "none",
legend.direction = "horizontal",
legend.box = "vertical",
legend.spacing = unit(0, "line"),
legend.key.size = unit(.75, "line"))
linebreak <- "\\hspace{\\textwidth}"
```
\newpage
\FloatBarrier
\pagenumbering{gobble}
```{r child = "components/Titlepage.Rmd", error=T, warning=T, message=T}
```
\pagenumbering{arabic}
\setcounter{tocdepth}{2}
\tableofcontents
\listoftables
\listoffigures
# Introduction {-}